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Identifier 000444281
Title Gilthead seabream (Sparus aurata) genome assembly, annotation and evolution of gene duplications
Alternative Title Κατασκευή γονιδιώματος του είδους (Sparus aurata) , εύρεση γονιδίων και εξέλιξη των διπλασιασμένων γονιδίων
Author Ελευθεριάδη, Κλάρα
Thesis advisor Μανουσάκη, Τερέζα
Reviewer Ηλιόπουλος, Ιωάννης
Νικολάου, Χριστόφορος
Abstract Gilthead seabream (Sparus aurata) is a teleost fish belonging to the Sparidae family, order Perciformes. It is considered the fish with the highest economic value in the Mediterranean aquaculture and has thus been the target of two sequencing efforts prior to our work. Here, we present an updated high quality reference genome assembly and annotation for Gilthead seabream. This new resource was used to inspect the evolution of species-specific gene duplications, using gene tree reconciliation and gene family evolution analyses from a dataset of 24 other fish species. The genome assembly pipeline resulted in a high quality chromosome level genome assembly (217 scaffolds, with 24 of them containing 98.6% of the genome, Ν50 equal to 37 Mbp, BUSCO completeness score 98% and 26,919 gene models). The gene duplication analysis revealed that Gilthead seabream has a typical teleost gene duplication pattern.
Language English
Subject Genomics
Issue date 2021-12-01
Collection   School/Department--School of Medicine--Department of Medicine--Post-graduate theses
  Type of Work--Post-graduate theses
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